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Longest Common Abelian Factors and Large Alphabets

Badkobeh, Golnaz; Gagie, Travis; Grabowski, Szymon; Nakashima, Yuto; Puglisi, Simon and Sugimoto, Shiho. 2016. Longest Common Abelian Factors and Large Alphabets. International Symposium on String Processing and Information Retrieval (SPIRE), pp. 254-259. [Article]

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Abstract or Description

Two strings X and Y are considered Abelian equal if the letters of X can be permuted to obtain Y (and vice versa). Recently, Alatabbi et al. (2015) considered the longest common Abelian factor problem in which we are asked to find the length of the longest Abelian-equal factor present in a given pair of strings. They provided an algorithm that uses O(σn2) time and O(σn) space, where n is the length of the pair of strings and σ is the alphabet size. In this paper we describe an algorithm that uses O(n2log2nlog∗n) time and O(nlog2n) space, significantly improving Alatabbi et al.’s result unless the alphabet is small. Our algorithm makes use of techniques for maintaining a dynamic set of strings under split, join, and equality testing (Melhorn et al., Algorithmica 17(2), 1997).

Item Type:

Article

Identification Number (DOI):

https://doi.org/10.1007/978-3-319-46049-9_24

Keywords:

Suffix Tree, Extra Space, Alphabet Size, Factor Length, Alphabet Symbol

Related URLs:

Departments, Centres and Research Units:

Computing

Dates:

DateEvent
26 June 2016Accepted
21 September 2016Published

Item ID:

23336

Date Deposited:

17 May 2018 13:21

Last Modified:

09 Jul 2018 19:17

Peer Reviewed:

Yes, this version has been peer-reviewed.

URI:

http://research.gold.ac.uk/id/eprint/23336

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